- uncompress(String, FileOutputStream) - Static method in class org.biojava.nbio.core.util.UncompressInputStream
-
Read a named file and uncompress it.
- uncompress(InputStream, OutputStream) - Static method in class org.biojava.nbio.core.util.UncompressInputStream
-
Read an input stream and uncompress it to an output stream.
- UncompressInputStream - Class in org.biojava.nbio.core.util
-
This class decompresses an input stream containing data compressed with
the unix "compress" utility (LZC, a LZW variant).
- UncompressInputStream(InputStream) - Constructor for class org.biojava.nbio.core.util.UncompressInputStream
-
- uncompressStream(InputStream, OutputStream) - Method in class com.physpics.tools.encoding.BZip
-
Decompresses from an input stream to an output stream
- unicodeToString(char) - Static method in class com.physpics.tools.debug.ObjectName
-
- unparseStringArray(ArrayList<String>) - Static method in class com.physpics.tools.ui.PropertyPack
-
Convert an array of strings into a single String bounded with [ and ]
and delimited with ",".
- unparseStringArray(String[]) - Static method in class com.physpics.tools.ui.PropertyPack
-
- unregister() - Method in class com.physpics.tools.SSColor
-
Remove registration of a color.
- unserialize(Class<?>, String) - Static method in class com.physpics.tools.geomaps.PixGrid
-
- unserialize(InputStream) - Static method in class com.physpics.tools.geomaps.PixGrid
-
- updateCRC(int) - Method in class org.apache.tools.bzip2.CRC
-
Incorporate an incoming byte into the CRC.
- updateCRC(int, int) - Method in class org.apache.tools.bzip2.CRC
-
Incorporate a sequence of identical bytes into the CRC.
- URI_PAT - Static variable in class com.physpics.tools.IOUtils
-
A Pattern for parsing a URI string
- uriEncode(String) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
Convert a String from an URL to a URI.
- URLCluster(URL) - Constructor for class com.physpics.tools.ui.PropertyPack.URLCluster
-
Construct a Cluster that reads files relative to an URL.
- URLCluster(URL, String) - Constructor for class com.physpics.tools.ui.PropertyPack.URLCluster
-
Construct a Cluster that looks in a given URL under a given
stem name.
- urlDecode(String) - Static method in class com.physpics.tools.encoding.EncodingManager
-
- urlDecode(ByteBuffer) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
- urlEncode(String) - Static method in class com.physpics.tools.encoding.EncodingManager
-
- urlEncode(ByteBuffer) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
- urlEncode(ByteBuffer, boolean) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
Returns a byte buffer in which all non-alphanumeric input characters
except - _ .
- urlEncodeString(String, String, boolean) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
Produce a URL-encoded (%xx) version of a string.
- USASCII - Static variable in class com.physpics.tools.encoding.EncodingManager
-
constant for Charset "US-ASCII"
Seven-bit ASCII, a.k.a.
- UTF8 - Static variable in class com.physpics.tools.encoding.EncodingManager
-
constant for Charset "UTF-8"
Eight-bit UCS Transformation Format
- uudecode() - Method in class com.physpics.tools.encoding.EncodingManager
-
uudecode the data, replacing the data with the decoded version
If the first line begins "begin " and an octal digit, the filename
is remembered and the entire line is otherwise ignored.
- uudecode(ByteBuffer) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
uudecode the data.
- uuencode(String) - Method in class com.physpics.tools.encoding.EncodingManager
-
Encode the data bytes with uuencoding.
- uuencode(String, String) - Method in class com.physpics.tools.encoding.EncodingManager
-
Encode the data bytes with uuencoding.
- uuencode(ByteBuffer, String, String) - Static method in class com.physpics.tools.encoding.PrintableEncodings
-
Encode the data bytes with uuencoding.